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CarnophageOffline
15 Post subject: [SOLVED] Unbootable system (probably libc6) [amd64]  PostPosted: 12.05.2011, 05:52



Joined: 2010-09-12
Posts: 59

Status: Offline
Hello,

After morning d-u I can't boot into my aptosid anymore. It stops with an kernel panic saying that /sbin/init could not be found.

Some logs from apt (sorry for the PL locales, but still the most important information should be understandable):

apt term.log
      Code:
Log started: 2011-05-12  06:52:04
(Odczytywanie bazy danych ... ^M(Odczytywanie bazy danych ... 5%^M(Odczytywanie bazy danych ... 10%^M(Odczytywanie bazy danych ... 15%^M(Odczytywanie bazy danych ... 20%^M(Odczytywanie bazy danych ... 25%^M(Odczytywanie bazy danych ... 30%^M(Odczytywanie bazy danych ... 35%^M(Odczytywanie bazy danych ... 40%^M(Odczytywanie bazy danych ... 45%^M(Odczytywanie bazy danych ... 50%^M(Odczytywanie bazy danych ... 55%^M(Odczytywanie bazy danych ... 60%^M(Odczytywanie bazy danych ... 65%^M(Odczytywanie bazy danych ... 70%^M(Odczytywanie bazy danych ... 75%^M(Odczytywanie bazy danych ... 80%^M(Odczytywanie bazy danych ... 85%^M(Odczytywanie bazy danych ... 90%^M(Odczytywanie bazy danych ... 95%^M(Odczytywanie bazy danych ... 100%^M(Odczytywanie bazy danych ... 163491 files and directories currently installed.)
Przygotowanie do zastąpienia libc6-dev 2.13-2 (wykorzystując .../libc6-dev_2.13-3_amd64.deb) ...
Rozpakowanie pakietu zastępującego libc6-dev ...
Przygotowanie do zastąpienia libc-dev-bin 2.13-2 (wykorzystując .../libc-dev-bin_2.13-3_amd64.deb) ...
Rozpakowanie pakietu zastępującego libc-dev-bin ...
Przygotowanie do zastąpienia libc-bin 2.13-2 (wykorzystując .../libc-bin_2.13-3_amd64.deb) ...
Rozpakowanie pakietu zastępującego libc-bin ...
Przetwarzanie wyzwalaczy dla man-db...
Konfigurowanie libc-bin (2.13-3) ...
(Odczytywanie bazy danych ... ^M(Odczytywanie bazy danych ... 5%^M(Odczytywanie bazy danych ... 10%^M(Odczytywanie bazy danych ... 15%^M(Odczytywanie bazy danych ... 20%^M(Odczytywanie bazy danych ... 25%^M(Odczytywanie bazy danych ... 30%^M(Odczytywanie bazy danych ... 35%^M(Odczytywanie bazy danych ... 40%^M(Odczytywanie bazy danych ... 45%^M(Odczytywanie bazy danych ... 50%^M(Odczytywanie bazy danych ... 55%^M(Odczytywanie bazy danych ... 60%^M(Odczytywanie bazy danych ... 65%^M(Odczytywanie bazy danych ... 70%^M(Odczytywanie bazy danych ... 75%^M(Odczytywanie bazy danych ... 80%^M(Odczytywanie bazy danych ... 85%^M(Odczytywanie bazy danych ... 90%^M(Odczytywanie bazy danych ... 95%^M(Odczytywanie bazy danych ... 100%^M(Odczytywanie bazy danych ... 163491 files and directories currently installed.)
Przygotowanie do zastąpienia libc6 2.13-2 (wykorzystując .../libc6_2.13-3_amd64.deb) ...
Rozpakowanie pakietu zastępującego libc6 ...
dpkg (podproces): unable to execute rm command for cleanup (rm): Nie ma takiego pliku ani katalogu
dpkg: błąd podczas czyszczenia środowiska:
 podproces rm cleanup zwrócił kod błędu 2
Could not exec dpkg!
Log ended: 2011-05-12  06:52:17


apt history.log
      Code:
Start-Date: 2011-05-12  06:52:04
Commandline: apt-get dist-upgrade
Upgrade: libc-bin:amd64 (2.13-2, 2.13-3), libsensors4:amd64 (3.3.0-1, 3.3.0-2), libfile-slurp-perl:amd64 (9999.13-3, 9999.16-1), locales:amd64 (2.13-2, 2.13-3), lm-sensors:amd64 (3.3.0-1, 3.3.0-2), libc6-dev:amd64 (2.13-2, 2.13-3), autotools-dev:amd64 (20110508.1, 20110511.1), libc-dev-bin:amd64 (2.13-2, 2.13-3), libc6:amd64 (2.13-2, 2.13-3)
Error: Sub-process /usr/bin/dpkg returned an error code (100)
End-Date: 2011-05-12  06:52:17


ls -l /sbin
      Code:
root@sysresccd /mnt/root/var/log/apt % ls -l /mnt/root/sbin
total 10220
-rwxr-xr-x 1 root root   4672 2009-12-02 11:00 acpi_available
-rwxr-xr-x 2 root root  19968 2011-02-13 15:50 agetty
-rwxr-xr-x 1 root root   5016 2009-12-02 11:00 apm_available
-rwxr-xr-x 1 root root  23576 2011-05-08 13:03 badblocks
-rwxr-xr-x 1 root root  23656 2011-02-13 15:50 blkid
-rwxr-xr-x 1 root root  13560 2011-02-13 15:50 blockdev
-rwxr-xr-x 1 root root   7164 2009-10-06 05:18 bootchartd
-rwxr-xr-x 1 root root  15768 2011-04-12 21:37 bootlogd
-rwxr-xr-x 1 root root  16352 2011-02-11 19:42 capsh
-rwxr-xr-x 1 root root  55888 2011-02-13 15:50 cfdisk
-rwxr-xr-x 1 root root    103 2011-04-28 19:32 coldreboot
-rwxr-xr-x 1 root root   5352 2011-02-13 15:50 ctrlaltdel
-rwxr-xr-x 1 root root  85976 2011-05-08 13:03 debugfs
-rwxr-xr-x 1 root root 213160 2009-03-06 20:46 debugreiserfs
-rwxr-xr-x 1 root root  67312 2010-06-27 22:09 depmod
-rwxr-xr-x 1 root root 495888 2011-04-10 16:59 dhclient
-rwxr-xr-x 1 root root   8002 2011-04-10 16:59 dhclient-script
-rwxr-xr-x 1 root root  61912 2011-03-28 12:45 dmsetup
-rwxr-xr-x 1 root root  48760 2010-01-31 07:55 dosfsck
-rwxr-xr-x 1 root root  46336 2010-01-31 07:55 dosfslabel
-rwxr-xr-x 1 root root  16456 2011-05-08 13:03 dumpe2fs
-rwxr-xr-x 5 root root 186752 2011-05-08 13:03 e2fsck
-rwxr-xr-x 1 root root  15312 2011-05-08 13:03 e2image
-rwxr-xr-x 2 root root  36240 2011-05-08 13:03 e2label
-rwxr-xr-x 1 root root   9096 2011-05-08 13:03 e2undo
-rwxr-xr-x 1 root root  95728 2011-02-13 15:50 fdisk
-rwxr-xr-x 1 root root   5816 2011-02-13 15:50 findfs
-rwxr-xr-x 1 root root  28696 2011-02-13 15:50 fsck
-rwxr-xr-x 1 root root  11944 2011-02-13 15:50 fsck.cramfs
-rwxr-xr-x 5 root root 186752 2011-05-08 13:03 fsck.ext2
-rwxr-xr-x 5 root root 186752 2011-05-08 13:03 fsck.ext3
-rwxr-xr-x 5 root root 186752 2011-05-08 13:03 fsck.ext4
-rwxr-xr-x 5 root root 186752 2011-05-08 13:03 fsck.ext4dev
-rwxr-xr-x 1 root root 393040 2009-11-29 22:34 fsck.jfs
-rwxr-xr-x 1 root root  27416 2011-02-13 15:50 fsck.minix
lrwxrwxrwx 1 root root      7 2010-03-10 11:32 fsck.msdos -> dosfsck
-rwxr-xr-x 1 root root    333 2011-04-12 21:36 fsck.nfs
-rwxr-xr-x 1 root root    282 2009-03-06 20:46 fsck.reiserfs
lrwxrwxrwx 1 root root      7 2010-03-10 11:32 fsck.vfat -> dosfsck
-rwxr-xr-x 1 root root    450 2011-04-05 10:49 fsck.xfs
-rwxr-xr-x 1 root root   5232 2011-04-12 21:37 fstab-decode
-rwxr-xr-x 1 root root   6864 2011-02-11 19:42 getcap
-rwxr-xr-x 1 root root   5936 2011-02-11 19:42 getpcaps
-rwxr-xr-x 2 root root  19968 2011-02-13 15:50 getty
-rwxr-xr-x 1 root root  41696 2009-08-06 16:37 gpart
-rwxr-xr-x 1 root root  15184 2011-04-12 21:37 halt
-rwxr-xr-x 1 root root  95616 2010-09-30 15:16 hdparm
-rwxr-xr-x 1 root root  40240 2011-02-13 15:50 hwclock
-rwxr-xr-x 1 root root  68304 2009-03-16 05:21 ifconfig
-rwxr-xr-x 2 root root  32112 2010-03-03 07:37 ifdown
-rwxr-xr-x 2 root root  32112 2010-03-03 07:37 ifup
-rwxr-xr-x 1 root root  37344 2011-04-12 21:37 init
-rwxr-xr-x 1 root root  10944 2010-06-27 22:09 insmod
-rwxr-xr-x 1 root root  53032 2011-03-19 16:47 insserv
-rwxr-xr-x 1 root root   2382 2011-02-10 22:28 installkernel
-rwxr-xr-x 1 root root  21000 2011-04-15 18:45 install-mbr
lrwxrwxrwx 1 root root      7 2011-04-07 11:32 ip -> /bin/ip
lrwxrwxrwx 1 root root     15 2010-10-30 08:38 ip6tables -> ip6tables-multi
-rwxr-xr-x 1 root root  45320 2010-10-29 16:47 ip6tables-multi
lrwxrwxrwx 1 root root     15 2010-10-30 08:38 ip6tables-restore -> ip6tables-multi
lrwxrwxrwx 1 root root     15 2010-10-30 08:38 ip6tables-save -> ip6tables-multi
-rwxr-xr-x 1 root root  14984 2009-03-16 05:21 ipmaddr
lrwxrwxrwx 1 root root     14 2010-10-30 08:38 iptables -> iptables-multi
-rwxr-xr-x 1 root root  53736 2010-10-29 16:47 iptables-multi
lrwxrwxrwx 1 root root     14 2010-10-30 08:38 iptables-restore -> iptables-multi
lrwxrwxrwx 1 root root     14 2010-10-30 08:38 iptables-save -> iptables-multi
-rwxr-xr-x 1 root root  18000 2009-03-16 05:21 iptunnel
-rwxr-xr-x 1 root root   7136 2011-02-13 15:50 isosize
-rwxr-xr-x 1 root root  24768 2010-07-04 09:23 iwconfig
-rwxr-xr-x 1 root root  15168 2010-07-04 09:23 iwevent
-rwxr-xr-x 1 root root  10888 2010-07-04 09:23 iwgetid
-rwxr-xr-x 1 root root  31696 2010-07-04 09:23 iwlist
-rwxr-xr-x 1 root root  11304 2010-07-04 09:23 iwpriv
-rwxr-xr-x 1 root root  10920 2010-07-04 09:23 iwspy
-rwxr-xr-x 1 root root  77928 2009-11-29 22:34 jfs_debugfs
-rwxr-xr-x 1 root root 393040 2009-11-29 22:34 jfs_fsck
-rwxr-xr-x 1 root root 201608 2009-11-29 22:34 jfs_fscklog
-rwxr-xr-x 1 root root 244432 2009-11-29 22:34 jfs_logdump
-rwxr-xr-x 1 root root  52584 2009-11-29 22:34 jfs_mkfs
-rwxr-xr-x 1 root root  21200 2009-11-29 22:34 jfs_tune
-rwxr-xr-x 1 root root   8296 2011-02-19 11:09 kbdrate
-rwxr-xr-x 1 root root   8008 2011-04-28 19:32 kdump
-rwxr-xr-x 1 root root 181416 2011-04-28 19:32 kexec
-rwxr-xr-x 1 root root  19352 2011-04-12 21:37 killall5
-rwxr-xr-x 1 root root 849992 2011-05-11 22:06 ldconfig
-rwxr-xr-x 1 root root   9208 2011-05-08 13:03 logsave
-rwxr-xr-x 1 root root  33840 2011-02-13 15:50 losetup
lrwxrwxrwx 1 root root     10 2010-06-28 05:45 lsmod -> /bin/lsmod
lrwxrwxrwx 1 root root      9 2011-04-25 21:19 lspcmcia -> pccardctl
-rwxr-xr-x 1 root root  15464 2009-03-16 05:21 mii-tool
-rwxr-xr-x 1 root root  15224 2010-09-25 15:40 mingetty
-rwxr-xr-x 1 root root  28040 2010-01-31 07:55 mkdosfs
-rwxr-xr-x 5 root root  57384 2011-05-08 13:03 mke2fs
-rwxr-xr-x 1 root root   6960 2011-02-13 15:50 mkfs
-rwxr-xr-x 1 root root  11440 2011-02-13 15:50 mkfs.bfs
-rwxr-xr-x 1 root root  21712 2011-02-13 15:50 mkfs.cramfs
-rwxr-xr-x 5 root root  57384 2011-05-08 13:03 mkfs.ext2
-rwxr-xr-x 5 root root  57384 2011-05-08 13:03 mkfs.ext3
-rwxr-xr-x 5 root root  57384 2011-05-08 13:03 mkfs.ext4
-rwxr-xr-x 5 root root  57384 2011-05-08 13:03 mkfs.ext4dev
-rwxr-xr-x 1 root root  52584 2009-11-29 22:34 mkfs.jfs
-rwxr-xr-x 1 root root  20304 2011-02-13 15:50 mkfs.minix
lrwxrwxrwx 1 root root      7 2010-03-10 11:32 mkfs.msdos -> mkdosfs
lrwxrwxrwx 1 root root     16 2009-12-31 03:17 mkfs.ntfs -> /usr/sbin/mkntfs
-rwxr-xr-x 1 root root 160968 2009-03-06 20:46 mkfs.reiserfs
lrwxrwxrwx 1 root root      7 2010-03-10 11:32 mkfs.vfat -> mkdosfs
-rwxr-xr-x 1 root root 266832 2011-04-05 10:49 mkfs.xfs
-rwxr-xr-x 1 root root  17576 2011-05-01 08:58 mkhomedir_helper
-rwxr-xr-x 1 root root 160968 2009-03-06 20:46 mkreiserfs
-rwxr-xr-x 1 root root  17808 2011-02-13 15:50 mkswap
-rwxr-xr-x 1 root root  28272 2010-06-27 22:09 modinfo
-rwxr-xr-x 1 root root  57360 2010-06-27 22:09 modprobe
-rwxr-xr-x 1 root root   8280 2011-04-23 15:52 mount.fuse
lrwxrwxrwx 1 root root     19 2011-03-22 20:37 mount.lowntfs-3g -> /usr/bin/lowntfs-3g
lrwxrwxrwx 1 root root     13 2011-03-22 20:37 mount.ntfs -> mount.ntfs-3g
lrwxrwxrwx 1 root root     16 2011-03-22 20:37 mount.ntfs-3g -> /usr/bin/ntfs-3g
lrwxrwxrwx 1 root root     18 2009-12-31 03:17 mount.ntfs-fuse -> /usr/bin/ntfsmount
-rwxr-xr-x 1 root root  11064 2009-03-16 05:21 nameif
-rwxr-xr-x 1 root root  11128 2010-10-29 16:47 nfnl_osf
-rwxr-xr-x 1 root root   2251 2009-12-02 08:57 on_ac_power
-rwxr-xr-x 1 root root   9104 2011-05-01 08:58 pam_tally
-rwxr-xr-x 1 root root  10984 2011-05-01 08:58 pam_tally2
-rwxr-xr-x 1 root root  81752 2010-12-19 13:30 parted
-rwxr-xr-x 1 root root   9432 2010-12-19 13:30 partprobe
-rwxr-xr-x 1 root root  15144 2011-04-25 21:19 pccardctl
-rwxr-xr-x 1 root root   4576 2011-02-13 15:50 pivot_root
-rwxr-xr-x 1 root root   6688 2009-03-16 05:21 plipconfig
lrwxrwxrwx 1 root root      4 2011-04-12 21:36 poweroff -> halt
-rwxr-xr-x 1 root root  28464 2009-03-16 05:21 rarp
-rwxr-xr-x 1 root root   8128 2011-02-13 15:50 raw
lrwxrwxrwx 1 root root      4 2011-04-12 21:36 reboot -> halt
-rwxr-xr-x 1 root root 303880 2009-03-06 20:46 reiserfsck
-rwxr-xr-x 1 root root 164360 2009-03-06 20:46 reiserfstune
-rwxr-xr-x 1 root root  36120 2011-05-08 13:03 resize2fs
-rwxr-xr-x 1 root root 159592 2009-03-06 20:46 resize_reiserfs
-rwxr-xr-x 1 root root  13064 2010-06-27 22:09 rmmod
-rwxr-xr-x 1 root root  59584 2009-03-16 05:21 route
-rwxr-xr-x 1 root root  33792 2011-04-07 11:32 rtacct
-rwxr-xr-x 1 root root  32128 2011-04-07 11:32 rtmon
-rwxr-xr-x 1 root root   4880 2011-04-12 21:37 runlevel
-rwxr-xr-x 1 root root   7712 2011-02-11 19:42 setcap
-rwxr-xr-x 1 root root  58096 2011-02-13 15:50 sfdisk
-rwxr-xr-x 1 root root    879 2011-02-16 06:44 shadowconfig
-rwxr-xr-x 1 root root  23696 2011-04-12 21:37 shutdown
-rwxr-xr-x 1 root root  31728 2009-03-16 05:21 slattach
-rwxr-xr-x 1 root root  69696 2011-04-07 11:32 ss
-rwxr-xr-x 1 root root  28400 2011-04-12 21:37 startpar
-rwxr-xr-x 1 root root  28560 2011-05-04 08:36 start-stop-daemon
-rwxr-xr-x 1 root root  15304 2011-04-12 21:37 sulogin
lrwxrwxrwx 1 root root      6 2011-02-14 17:47 swapoff -> swapon
-rwxr-xr-x 1 root root  23888 2011-02-13 15:50 swapon
-rwxr-xr-x 1 root root   8648 2011-02-13 15:50 switch_root
-rwxr-xr-x 1 root root  13008 2010-11-18 11:53 sysctl
-rwxr-xr-x 1 root root 256904 2011-04-07 11:32 tc
lrwxrwxrwx 1 root root      4 2011-04-12 21:36 telinit -> init
-rwxr-xr-x 2 root root  36240 2011-05-08 13:03 tune2fs
-rwxr-xr-x 1 root root 149504 2011-05-11 01:05 udevadm
-rwxr-xr-x 1 root root 149568 2011-05-11 01:05 udevd
-rwxr-xr-x 1 root root   7576 2011-03-11 17:11 umount.udisks
-rwxr-sr-x 1 root   42  31864 2011-05-01 08:58 unix_chkpwd
-rwxr-xr-x 1 root root  31824 2011-05-01 08:58 unix_update
-rwxr-xr-x 1 root root  12088 2011-02-13 15:50 wipefs
-rwxr-xr-x 1 root root   1735 2011-04-17 10:15 wpa_action
-rwxr-xr-x 1 root root  46728 2011-04-17 21:05 wpa_cli
-rwxr-xr-x 1 root root 868008 2011-04-17 21:05 wpa_supplicant
-rwxr-xr-x 1 root root 469168 2011-04-05 10:49 xfs_repair


Can anyone confirm that the problem is in libc6 upgrade?
I must leave for work now, so any other possible logs/outputs can be delivered in the evening


Last edited by Carnophage on 12.05.2011, 16:51; edited 1 time in total
 
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micha_52Offline
Post subject: RE: Unbootable system (probably libc6) [amd64]  PostPosted: 12.05.2011, 06:20



Joined: 2010-09-12
Posts: 18
Location: Nordstemmen
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same here. System is unbootable after d-u
 
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DonKultOffline
Post subject: RE: Unbootable system (probably libc6) [amd64]  PostPosted: 12.05.2011, 06:31
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The issue was reported on debian-devel a few minutes ago, too.
http://lists.debian.org/debian-devel/20 ... 00553.html

So, PLEASE DON'T UPGRADE (if you don't want to break your system completely…) until further notice.


//edit: Mailarchive updated, so i added the url.

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Last edited by DonKult on 12.05.2011, 07:11; edited 1 time in total
 
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etorixOffline
Post subject: RE: Unbootable system (probably libc6) [amd64]  PostPosted: 12.05.2011, 07:00
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Joined: 2010-08-26
Posts: 137

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http://bugs.debian.org/cgi-bin/bugrepor ... =%23626457

      Code:
The 2.13-3 version of libc6 doesn't include the lib64 symlink (in root and in /usr), thus making the system unusable (and blocking dpkg in the middle of operations).

Restoring the symlink solve the problem.


allegedly
 
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ovlOffline
Post subject:   PostPosted: 12.05.2011, 08:11



Joined: 2010-09-12
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Has the same problem. After restoring lib64 symlinks system is OK. One should restore lib64 symlinks both in / and /usr folders.
 
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earlybirdOffline
Post subject:   PostPosted: 12.05.2011, 08:33



Joined: 2011-05-12
Posts: 1

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I was hit by the same bug. It would be great if you could write how to restore the necessary symlinks from an aptosid live-CD. I have no clue how to restore the lib64 symlinks. Thanks a lot!
 
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etorixOffline
Post subject:   PostPosted: 12.05.2011, 08:41
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restore the lib64 symlinks in root and in /usr, from live-cd or another system:
see also http://lists.debian.org/debian-devel/20 ... 00558.html

UPDATED:
      Code:
mount /dev/sdxx /target
cd /target/lib
ln -s /lib lib64
mount /dev/sdyy /target/usr
cd /target/usr
ln -s /lib lib64


and then reboot to init 3

You can then do

      Code:
apt-get -f install
apt-get dist-upgrade


DO NOT try to downgrade libc6 from testing [it will take out half yer system]
 
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micha_52Offline
Post subject:   PostPosted: 12.05.2011, 09:55



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The issue is solved with libc6 2.13-4 so a d-u can be performed now
 
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etorixOffline
Post subject:   PostPosted: 12.05.2011, 10:34
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UPDATE: the 'fixed' libc6 2.13-4 is now hitting the mirrors
 
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muchan
Post subject:   PostPosted: 12.05.2011, 12:09
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Joined: 2010-09-11
Posts: 468

It's resolved and already history, but
      Code:

mount /dev/sdxx /target
cd /target/lib
ln -s /lib lib64
mount /dev/sdyy /target/usr
cd /target/usr
ln -s /lib lib64

creates
/lib/lib64 -> /lib
and
/usr/lib64 -> /lib
where what the package provides is
/lib64 -> /lib
and
/usr/lib64 -> /usr/lib
So, i think write command should be:
      Code:

mount /dev/sdxx /target
cd /target
ln -s lib lib64
mount /dev/sdyy /target/usr
cd /target/usr
ln -s lib lib64
 
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DeepDayzeOffline
Post subject:   PostPosted: 12.05.2011, 14:50



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Thanks for the warning and the fix. Once I fix the symlinks how can I get the du to complete?
 
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hubiOffline
Post subject:   PostPosted: 12.05.2011, 15:35
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      DeepDayze wrote:
how can I get the du to complete?

      Code:
apt-get -f install
?

hubi

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DeepDayzeOffline
Post subject:   PostPosted: 12.05.2011, 16:48



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      hubi wrote:
      DeepDayze wrote:
how can I get the du to complete?

      Code:
apt-get -f install
?

hubi


I'll give that a try
 
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